CW-PRED

Please paste up to 5000 FASTA-formatted sequences in the textarea below:



Select source organism type: Archaea   Gram-positive bacteria   Gram-negative bacteria

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Note: If you wish to perform a batch submission of more than 5000 sequences, please contact pbagoscompgen.org directly.

Download the training sets, the trained models and configuration files to run CW-PRED locally using the JUCHMME package here.

If you find CW-PRED useful in your research, please consider citing the reference that describes this work:

A Hidden Markov Model for the prediction of C-terminal cell-wall sorting signals in Bacteria and Archaea.
under review in JBCB

CW-PRED can be run locally, using the JUCHMME Java package:
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis.
PMID: 31250907